1.1.00 / January 16, 2015
(3.4/5) (5)
Loading...

Description

Educational project / draft for real-time E.coli chemotaxissimulator. Currently in development. This release represents mostrecent milestone build.~Git repository source available atgit@blik.bounceme.net:/opt/git/expand.gitRSA key for repositoryavailable on Freedcamp project management site. ~If you would likeaccess to the source, and contribute to development please contactme at the provided email address.~Version 1.1.00:~Features ofsimulator - designed and coded by Dr. Nikita Vladimirov.1)Simulation of cells swimming in 2D with realistic run and tumbletimes, and with effect of rotational diffusion.2) Simultaneousrunning of one up to a large number of cells local on yourtablet.3) Model correctly reproduces the high sensitivity of thechemotactic pathway (FRET experiments).4) Multiple flagellar motorsare simulated explicitly, and their number affect run and tumbletimes.5) Gradient of attractant can be chosen from 8 pre-definedshapes, or defined by user.6) Composition of receptor cluster (Tarand Tsr receptors) can be defined by user.7) Protein levels (CheA,CheR, CheB, CheY) can be altered to simulate mutants.~NewFeatures1) Plot is now an actual animation of path over time.2)Each cells is now delineated by a unique color.3) Random seedfunctions have been implemented on program and model start toensure unique results each run.~Future Directions1) Migrate modelcomputations and video rendering to cloud2) Plot to zoomable andspinnable object.3) Add cell animations to plots representing cellstructures, and signaling events.~BUG Fixes1) Fixed resetting modelso that multiple analyses could be run in one instance

App Information EcoliSim

  • App Name
    EcoliSim
  • Package Name
    net.bounceme.blik.ecolisim
  • Updated
    January 16, 2015
  • File Size
    971k
  • Requires Android
    Android 4.0.3 and up
  • Version
    1.1.00
  • Developer
    mforde84
  • Installs
    50+
  • Price
    Free
  • Category
    Education
  • Developer
  • Google Play Link

mforde84 Show More...

EcoliSim 1.1.00 APK
mforde84
Educational project / draft for real-time E.coli chemotaxissimulator. Currently in development. This release represents mostrecent milestone build.~Git repository source available atgit@blik.bounceme.net:/opt/git/expand.gitRSA key for repositoryavailable on Freedcamp project management site. ~If you would likeaccess to the source, and contribute to development please contactme at the provided email address.~Version 1.1.00:~Features ofsimulator - designed and coded by Dr. Nikita Vladimirov.1)Simulation of cells swimming in 2D with realistic run and tumbletimes, and with effect of rotational diffusion.2) Simultaneousrunning of one up to a large number of cells local on yourtablet.3) Model correctly reproduces the high sensitivity of thechemotactic pathway (FRET experiments).4) Multiple flagellar motorsare simulated explicitly, and their number affect run and tumbletimes.5) Gradient of attractant can be chosen from 8 pre-definedshapes, or defined by user.6) Composition of receptor cluster (Tarand Tsr receptors) can be defined by user.7) Protein levels (CheA,CheR, CheB, CheY) can be altered to simulate mutants.~NewFeatures1) Plot is now an actual animation of path over time.2)Each cells is now delineated by a unique color.3) Random seedfunctions have been implemented on program and model start toensure unique results each run.~Future Directions1) Migrate modelcomputations and video rendering to cloud2) Plot to zoomable andspinnable object.3) Add cell animations to plots representing cellstructures, and signaling events.~BUG Fixes1) Fixed resetting modelso that multiple analyses could be run in one instance
Loading...